IL_7NWH_252

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_252 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1435

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7NWH|1|9|C|1739
7NWH|1|9|C|1740
7NWH|1|9|U|1741
*
7NWH|1|9|A|1793
7NWH|1|9|C|1794
7NWH|1|9|G|1795

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain W

60S ribosomal protein L24-like protein