IL_7NWH_261

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_261 not in the Motif Atlas

Homologous match to IL_8P9A_303

Geometric discrepancy: 0.2833

The information below is about IL_8P9A_303

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

7NWH|1|5|A|2844
7NWH|1|5|A|2845
7NWH|1|5|G|2846
*
7NWH|1|5|C|3842
7NWH|1|5|C|3843
7NWH|1|5|U|3844

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

eL14

Chain W

60S ribosomal protein L24-like protein