IL_7NWH_268

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_268 not in the Motif Atlas

Geometric match to IL_7R9G_002

Geometric discrepancy: 0.3014

The information below is about IL_7R9G_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7NWH|1|9|G|692
7NWH|1|9|A|693
7NWH|1|9|G|694
7NWH|1|9|C|695
*
7NWH|1|9|G|731
7NWH|1|9|U|732
7NWH|1|9|C|733
7NWH|1|9|C|734

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain HH

S7

Chain WW

Ribosomal protein S15a