IL_7NWH_281

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

7NWH|1|9|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_281 not in the Motif Atlas

Homologous match to IL_8CRE_444

Geometric discrepancy: 0.2206

The information below is about IL_8CRE_444

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7NWH|1|9|G|1206
7NWH|1|9|G|1207
7NWH|1|9|A|1208
*
7NWH|1|9|U|1691
7NWH|1|9|U|1692

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain aa

40S ribosomal protein S26

Chain hh

mRNA