IL_7NWI_002

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGACC*GCGUCG

Length

11 nucleotides

Bulged bases

7NWI|1|8|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|C|3
7NWI|1|5|G|4
7NWI|1|5|A|5
7NWI|1|5|C|6
7NWI|1|5|C|7
*
7NWI|1|8|G|149
7NWI|1|8|C|150
7NWI|1|8|G|151
7NWI|1|8|U|152
7NWI|1|8|C|153
7NWI|1|8|G|154

Current chains

Chain 5

28S ribosomal RNA+BlaS

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain X

uL23