IL_7NWI_010
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 7NWI|1|5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_010 not in the Motif Atlas
- Geometric match to IL_1S03_006
- Geometric discrepancy: 0.3203
- The information below is about IL_1S03_006
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
7NWI|1|5|C|125
7NWI|1|5|C|126
*
7NWI|1|5|G|142
7NWI|1|5|C|143
7NWI|1|5|G|144
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain X
- uL23
- Chain h
- uL29
Coloring options: