IL_7NWI_013
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UCGUGG*CG
- Length
- 8 nucleotides
- Bulged bases
- 7NWI|1|5|G|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_013 not in the Motif Atlas
- Geometric match to IL_1KXK_003
- Geometric discrepancy: 0.2551
- The information below is about IL_1KXK_003
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
7NWI|1|5|U|184
7NWI|1|5|C|185
7NWI|1|5|G|186
7NWI|1|5|U|187
7NWI|1|5|G|188
7NWI|1|5|G|189
*
7NWI|1|5|C|252
7NWI|1|5|G|253
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- L13
- Chain j
- Ribosomal protein L37
Coloring options: