IL_7NWI_015

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7NWI|1|5|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_015 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.2442

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NWI|1|5|G|199
7NWI|1|5|U|200
7NWI|1|5|C|201
*
7NWI|1|5|G|214
7NWI|1|5|C|215

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain Y

Ribosomal protein L26