IL_7NWI_036

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

7NWI|1|5|G|933, 7NWI|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|G|731
7NWI|1|5|A|732
7NWI|1|5|A|733
7NWI|1|5|G|734
7NWI|1|5|G|735
*
7NWI|1|5|C|928
7NWI|1|5|A|929
7NWI|1|5|G|930
7NWI|1|5|C|931
7NWI|1|5|A|932
7NWI|1|5|G|933
7NWI|1|5|C|934
7NWI|1|5|A|935
7NWI|1|5|C|936
7NWI|1|5|U|937
7NWI|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

Ribosomal protein L14

Chain S

L18a