IL_7NWI_052

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_052 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2494

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7NWI|1|5|C|1431
7NWI|1|5|G|1432
7NWI|1|5|A|1433
7NWI|1|5|G|1434
*
7NWI|1|5|C|1450
7NWI|1|5|G|1451
7NWI|1|5|A|1452
7NWI|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain Q

Ribosomal_L18e/L15P domain-containing protein