IL_7NWI_055

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_055 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.3749

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7NWI|1|5|C|1474
7NWI|1|5|G|1475
7NWI|1|5|C|1476
*
7NWI|1|5|G|1488
7NWI|1|5|G|1489

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain L

L13

Chain a

uL15

Chain b

60S ribosomal protein L29

Chain o

LOW QUALITY PROTEIN: 60S ribosomal protein L36a