IL_7NWI_058

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

7NWI|1|5|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_058 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.2281

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7NWI|1|5|G|1550
7NWI|1|5|C|1551
*
7NWI|1|5|G|1576
7NWI|1|5|G|1577
7NWI|1|5|U|1578

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain A

L8

Chain R

60S ribosomal protein L19

Chain p

ribosomal protein eL43