IL_7NWI_081

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7NWI|1|5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_081 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.2661

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NWI|1|5|G|1946
7NWI|1|5|U|1947
7NWI|1|5|G|1948
*
7NWI|1|5|C|2035
7NWI|1|5|C|2036

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain H

L9

Chain S

L18a

Chain m

60S ribosomal protein L40