IL_7NWI_099

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7NWI|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_099 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2269

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7NWI|1|5|C|2646
7NWI|1|5|A|2647
7NWI|1|5|G|2648
*
7NWI|1|5|C|2685
7NWI|1|5|G|2686
7NWI|1|5|U|2687
7NWI|1|5|G|2688

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain g

60S ribosomal protein L34