IL_7NWI_121

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7NWI|1|5|A|3901, 7NWI|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_121 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1487

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NWI|1|5|G|3900
7NWI|1|5|A|3901
7NWI|1|5|A|3902
*
7NWI|1|5|U|4558
7NWI|1|5|A|4559
7NWI|1|5|C|4560
7NWI|1|5|C|4561

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 1

Sec61Beta

Chain B

uL3

Chain P

L17