IL_7NWI_124

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7NWI|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_124 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1522

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7NWI|1|5|U|3927
7NWI|1|5|A|3928
7NWI|1|5|G|3929
*
7NWI|1|5|U|4181
7NWI|1|5|G|4182
7NWI|1|5|G|4183
7NWI|1|5|G|4184

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain A

L8

Chain N

Ribosomal protein L15

Chain o

LOW QUALITY PROTEIN: 60S ribosomal protein L36a