IL_7NWI_132
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GACC*GC
- Length
- 6 nucleotides
- Bulged bases
- 7NWI|1|5|C|4349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_132 not in the Motif Atlas
- Geometric match to IL_7RQB_058
- Geometric discrepancy: 0.2662
- The information below is about IL_7RQB_058
- Detailed Annotation
- Single stack bend
- Broad Annotation
- Single stack bend
- Motif group
- IL_76488.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 36
Unit IDs
7NWI|1|5|G|4347
7NWI|1|5|A|4348
7NWI|1|5|C|4349
7NWI|1|5|C|4350
*
7NWI|1|5|G|4364
7NWI|1|5|C|4365
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain L
- L13
- Chain Q
- Ribosomal_L18e/L15P domain-containing protein
- Chain a
- uL15
- Chain o
- LOW QUALITY PROTEIN: 60S ribosomal protein L36a
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