IL_7NWI_146

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_146 not in the Motif Atlas

Homologous match to IL_5TBW_115

Geometric discrepancy: 0.1706

The information below is about IL_5TBW_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7NWI|1|5|A|4590
7NWI|1|5|U|4591
7NWI|1|5|C|4592
*
7NWI|1|5|G|4618
7NWI|1|5|U|4619
7NWI|1|5|U|4620

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain V

eL14