IL_7NWI_176

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7NWI|1|9|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_176 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3412

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7NWI|1|9|C|37
7NWI|1|9|A|38
7NWI|1|9|A|39
7NWI|1|9|A|40
*
7NWI|1|9|U|514
7NWI|1|9|G|515
7NWI|1|9|A|516
7NWI|1|9|C|517
7NWI|1|9|G|518

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

S4

Chain JJ

40S ribosomal protein S9