IL_7NWI_188

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|9|C|223
7NWI|1|9|A|224
7NWI|1|9|G|225
7NWI|1|9|U|287
7NWI|1|9|G|288
*
7NWI|1|9|C|295
7NWI|1|9|U|296
7NWI|1|9|A|297
7NWI|1|9|G|298

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain LL

40S ribosomal protein S11