IL_7NWI_195

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7NWI|1|9|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_195 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.2097

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NWI|1|9|U|487
7NWI|1|9|U|488
7NWI|1|9|A|489
*
7NWI|1|9|U|511
7NWI|1|9|A|512

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

S4

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24