IL_7NWI_199

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_199 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.3953

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7NWI|1|9|G|535
7NWI|1|9|A|536
7NWI|1|9|C|537
*
7NWI|1|9|G|546
7NWI|1|9|G|547
7NWI|1|9|C|548
7NWI|1|9|C|549

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain ee

40S ribosomal protein S30