IL_7NWI_216

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7NWI|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_216 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1576

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7NWI|1|9|G|924
7NWI|1|9|G|925
7NWI|1|9|A|926
7NWI|1|9|C|927
*
7NWI|1|9|G|1014
7NWI|1|9|U|1015
7NWI|1|9|U|1016
7NWI|1|9|U|1017
7NWI|1|9|U|1018

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

ribosomal protein uS15

Chain bb

40S ribosomal protein S27