IL_7NWI_226

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_226 not in the Motif Atlas

Geometric match to IL_4V88_388

Geometric discrepancy: 0.3386

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7NWI|1|9|G|1108
7NWI|1|9|C|1109
7NWI|1|9|G|1110
*
7NWI|1|9|C|1123
7NWI|1|9|C|1124

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain BB

40S ribosomal protein S3a

Chain RR

S17

Chain bb

40S ribosomal protein S27