IL_7NWI_231
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_231 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1907
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7NWI|1|9|C|1230
7NWI|1|9|C|1231
7NWI|1|9|U|1232
*
7NWI|1|9|G|1526
7NWI|1|9|C|1527
7NWI|1|9|G|1528
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain QQ
- Rps16 protein
- Chain SS
- ribosomal protein uS13
- Chain TT
- S19
- Chain UU
- Ribosomal_S10 domain-containing protein
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