IL_7NWI_233

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_233 not in the Motif Atlas

Geometric match to IL_5MWI_006

Geometric discrepancy: 0.1148

The information below is about IL_5MWI_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

7NWI|1|9|G|1270
7NWI|1|9|C|1271
7NWI|1|9|C|1272
*
7NWI|1|9|G|1510
7NWI|1|9|U|1511
7NWI|1|9|C|1512

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

S10_plectin domain-containing protein

Chain dd

ribosomal protein uS14

Chain ff

S27a