IL_7NWI_244

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAAG*CCCGAG

Length

10 nucleotides

Bulged bases

7NWI|1|9|A|1474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|9|C|1453
7NWI|1|9|A|1454
7NWI|1|9|A|1455
7NWI|1|9|G|1456
*
7NWI|1|9|C|1470
7NWI|1|9|C|1471
7NWI|1|9|C|1472
7NWI|1|9|G|1473
7NWI|1|9|A|1474
7NWI|1|9|G|1475

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain QQ

Rps16 protein

Chain RR

S17

Chain cc

40S ribosomal protein S28

Chain gg

ribosomal protein RACK1