IL_7NWI_245
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_245 not in the Motif Atlas
- Geometric match to IL_4E59_001
- Geometric discrepancy: 0.1439
- The information below is about IL_4E59_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
7NWI|1|9|A|1537
7NWI|1|9|C|1538
7NWI|1|9|U|1539
*
7NWI|1|9|A|1594
7NWI|1|9|U|1595
7NWI|1|9|U|1596
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain FF
- Ribosomal protein S5
- Chain QQ
- Rps16 protein
- Chain SS
- ribosomal protein uS13
- Chain TT
- S19
- Chain ZZ
- 40S ribosomal protein S25
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