IL_7NWI_248

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_248 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1114

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7NWI|1|9|G|1604
7NWI|1|9|G|1605
7NWI|1|9|G|1606
7NWI|1|9|A|1607
7NWI|1|9|U|1608
7NWI|1|9|C|1609
7NWI|1|9|G|1610
*
7NWI|1|9|C|1629
7NWI|1|9|A|1630
7NWI|1|9|U|1631
7NWI|1|9|G|1632
7NWI|1|9|A|1633
7NWI|1|9|A|1634
7NWI|1|9|C|1635

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain SS

ribosomal protein uS13

Chain TT

S19