IL_7NWI_268

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGC*GGUC

Length

7 nucleotides

Bulged bases

7NWI|1|5|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_268 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1964

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

7NWI|1|5|G|1549
7NWI|1|5|G|1550
7NWI|1|5|C|1551
*
7NWI|1|5|G|1576
7NWI|1|5|G|1577
7NWI|1|5|U|1578
7NWI|1|5|C|1579

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain A

L8

Chain R

60S ribosomal protein L19

Chain p

ribosomal protein eL43