IL_7NWI_279

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_279 not in the Motif Atlas

Homologous match to IL_8P9A_408

Geometric discrepancy: 0.5714

The information below is about IL_8P9A_408

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7NWI|1|9|G|694
7NWI|1|9|C|695
7NWI|1|9|G|696
*
7NWI|1|9|C|734
7NWI|1|9|C|735
7NWI|1|9|C|736

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

ribosomal protein eS7

Chain WW

Ribosomal protein S15a