IL_7NWI_286

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AACUAG*CUUCUU

Length

12 nucleotides

Bulged bases

7NWI|1|9|C|1403, 7NWI|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|9|A|1401
7NWI|1|9|A|1402
7NWI|1|9|C|1403
7NWI|1|9|U|1404
7NWI|1|9|A|1405
7NWI|1|9|G|1406
*
7NWI|1|9|C|1440
7NWI|1|9|U|1441
7NWI|1|9|U|1442
7NWI|1|9|C|1443
7NWI|1|9|U|1444
7NWI|1|9|U|1445

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain QQ

Rps16 protein

Chain UU

Ribosomal_S10 domain-containing protein