IL_7NWT_009

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2523

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7NWT|1|1|C|274
7NWT|1|1|C|275
7NWT|1|1|U|276
7NWT|1|1|G|277
7NWT|1|1|A|278
7NWT|1|1|A|279
7NWT|1|1|U|280
7NWT|1|1|C|281
*
7NWT|1|1|G|359
7NWT|1|1|U|360
7NWT|1|1|G|361
7NWT|1|1|A|362
7NWT|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains