3D structure

PDB id
7NWT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7NWT|1|1|A|504, 7NWT|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NWT_011 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0595
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7NWT|1|1|G|481
7NWT|1|1|A|482
7NWT|1|1|A|483
7NWT|1|1|C|484
*
7NWT|1|1|G|496
7NWT|1|1|A|497
7NWT|1|1|G|498
7NWT|1|1|U|499
7NWT|1|1|G|500
7NWT|1|1|A|501
7NWT|1|1|A|502
7NWT|1|1|A|503
7NWT|1|1|A|504
7NWT|1|1|A|505
7NWT|1|1|G|506
7NWT|1|1|A|507
7NWT|1|1|A|508
7NWT|1|1|C|509

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1456 s