3D structure

PDB id
7NWT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GUAAG*UAUC
Length
9 nucleotides
Bulged bases
7NWT|1|1|A|1205
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NWT_043 not in the Motif Atlas
Homologous match to IL_5J7L_287
Geometric discrepancy: 0.0712
The information below is about IL_5J7L_287
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_91920.1
Basepair signature
cWW-cWW-tHH-cWW
Number of instances in this motif group
1

Unit IDs

7NWT|1|1|G|1202
7NWT|1|1|U|1203
7NWT|1|1|A|1204
7NWT|1|1|A|1205
7NWT|1|1|G|1206
*
7NWT|1|1|U|1240
7NWT|1|1|A|1241
7NWT|1|1|U|1242
7NWT|1|1|C|1243

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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