IL_7NWT_085

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGUAGGAUAGGUG*CACCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_085 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3917

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7NWT|1|1|G|2110
7NWT|1|1|U|2111
7NWT|1|1|G|2112
7NWT|1|1|U|2113
7NWT|1|1|A|2114
7NWT|1|1|G|2115
7NWT|1|1|G|2116
7NWT|1|1|A|2117
7NWT|1|1|U|2118
7NWT|1|1|A|2119
7NWT|1|1|G|2120
7NWT|1|1|G|2121
7NWT|1|1|U|2122
7NWT|1|1|G|2123
*
7NWT|1|1|C|2175
7NWT|1|1|A|2176
7NWT|1|1|C|2177
7NWT|1|1|C|2178
7NWT|1|1|C|2179

Current chains

Chain 1

23S ribosomal RNA

Nearby chains