IL_7NWT_087

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7NWT|1|1|U|2131, 7NWT|1|1|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_087 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4071

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7NWT|1|1|C|2129
7NWT|1|1|U|2130
7NWT|1|1|U|2131
7NWT|1|1|U|2132
7NWT|1|1|G|2133
7NWT|1|1|A|2134
7NWT|1|1|A|2135
7NWT|1|1|G|2136
*
7NWT|1|1|U|2155
7NWT|1|1|G|2156
7NWT|1|1|G|2157
7NWT|1|1|A|2158
7NWT|1|1|G|2159

Current chains

Chain 1

23S ribosomal RNA

Nearby chains