IL_7NWT_130

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7NWT|1|2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_130 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0623

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7NWT|1|2|G|446
7NWT|1|2|G|447
7NWT|1|2|A|448
7NWT|1|2|G|449
7NWT|1|2|G|450
*
7NWT|1|2|C|483
7NWT|1|2|G|484
7NWT|1|2|U|485
7NWT|1|2|U|486
7NWT|1|2|A|487
7NWT|1|2|C|488

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain AA

Protein 2A

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16