IL_7NWT_162

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

7NWT|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_162 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1097

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7NWT|1|2|C|1158
7NWT|1|2|U|1159
7NWT|1|2|G|1160
7NWT|1|2|C|1161
*
7NWT|1|2|G|1175
7NWT|1|2|A|1176
7NWT|1|2|G|1177
7NWT|1|2|G|1178
7NWT|1|2|A|1179
7NWT|1|2|A|1180
7NWT|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9