IL_7NWT_169

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

7NWT|1|2|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_169 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.4135

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7NWT|1|2|G|1405
7NWT|1|2|U|1406
7NWT|1|2|5MC|1407
7NWT|1|2|A|1408
7NWT|1|2|C|1409
*
7NWT|1|2|G|1491
7NWT|1|2|A|1492
7NWT|1|2|A|1493
7NWT|1|2|G|1494
7NWT|1|2|U|1495
7NWT|1|2|C|1496

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain XX

mRNA

Chain q

30S ribosomal protein S12