IL_7NWT_181

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GACG*CGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_181 not in the Motif Atlas

Geometric match to IL_7ECK_023

Geometric discrepancy: 0.3648

The information below is about IL_7ECK_023

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

7NWT|1|1|G|1168
7NWT|1|1|A|1169
7NWT|1|1|C|1170
7NWT|1|1|G|1171
*
7NWT|1|1|C|1178
7NWT|1|1|G|1179
7NWT|1|1|U|1180
7NWT|1|1|U|1181

Current chains

Chain 1

23S ribosomal RNA

Nearby chains