IL_7NWW_131

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWW_131 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0889

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NWW|1|2|U|409
7NWW|1|2|G|410
7NWW|1|2|A|411
7NWW|1|2|A|412
7NWW|1|2|G|413
7NWW|1|2|A|414
7NWW|1|2|A|415
7NWW|1|2|G|416
*
7NWW|1|2|U|427
7NWW|1|2|G|428
7NWW|1|2|U|429
7NWW|1|2|A|430
7NWW|1|2|A|431
7NWW|1|2|A|432
7NWW|1|2|G|433

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4