IL_7O1A_020

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O1A_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0816

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7O1A|1|AA|U|409
7O1A|1|AA|G|410
7O1A|1|AA|A|411
7O1A|1|AA|A|412
7O1A|1|AA|G|413
7O1A|1|AA|A|414
7O1A|1|AA|A|415
7O1A|1|AA|G|416
*
7O1A|1|AA|U|427
7O1A|1|AA|G|428
7O1A|1|AA|U|429
7O1A|1|AA|A|430
7O1A|1|AA|A|431
7O1A|1|AA|A|432
7O1A|1|AA|G|433

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4