IL_7O1A_022

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7O1A|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O1A_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0781

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7O1A|1|AA|G|446
7O1A|1|AA|G|447
7O1A|1|AA|A|448
7O1A|1|AA|G|449
7O1A|1|AA|G|450
*
7O1A|1|AA|C|483
7O1A|1|AA|G|484
7O1A|1|AA|U|485
7O1A|1|AA|U|486
7O1A|1|AA|A|487
7O1A|1|AA|C|488

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16