3D structure

PDB id
7O1A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GU(5MC)AC*GAAGUC
Length
11 nucleotides
Bulged bases
7O1A|1|AA|A|1493
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O1A_061 not in the Motif Atlas
Homologous match to IL_6CZR_167
Geometric discrepancy: 0.4692
The information below is about IL_6CZR_167
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7O1A|1|AA|G|1405
7O1A|1|AA|U|1406
7O1A|1|AA|5MC|1407
7O1A|1|AA|A|1408
7O1A|1|AA|C|1409
*
7O1A|1|AA|G|1491
7O1A|1|AA|A|1492
7O1A|1|AA|A|1493
7O1A|1|AA|G|1494
7O1A|1|AA|U|1495
7O1A|1|AA|C|1496

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AL
30S ribosomal protein S12
Chain B7
mRNA
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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