IL_7O5B_013

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

7O5B|1|A|A|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_013 not in the Motif Atlas

Geometric match to IL_6JQ6_005

Geometric discrepancy: 0.3385

The information below is about IL_6JQ6_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_83945.1

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|A|U|257
7O5B|1|A|A|258
7O5B|1|A|G|259
7O5B|1|A|U|260
*
7O5B|1|A|A|282
7O5B|1|A|G|283

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain Q

30S ribosomal protein S17

Chain X

Large subunit ribosomal RNA; LSU rRNA