IL_7O5B_016

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_016 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1503

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

6

Unit IDs

7O5B|1|A|G|379
7O5B|1|A|C|380
7O5B|1|A|A|381
7O5B|1|A|A|382
7O5B|1|A|U|383
*
7O5B|1|A|A|397
7O5B|1|A|C|398

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain P

30S ribosomal protein S16