IL_7O5B_018

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAUGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

7O5B|1|A|U|420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.529

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7O5B|1|A|U|417
7O5B|1|A|G|418
7O5B|1|A|A|419
7O5B|1|A|U|420
7O5B|1|A|G|421
7O5B|1|A|A|422
7O5B|1|A|A|423
7O5B|1|A|G|424
*
7O5B|1|A|C|435
7O5B|1|A|G|436
7O5B|1|A|U|437
7O5B|1|A|A|438
7O5B|1|A|A|439
7O5B|1|A|A|440
7O5B|1|A|G|441

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain D

30S ribosomal protein S4