IL_7O5B_021
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_021 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1571
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
7O5B|1|A|C|513
7O5B|1|A|G|514
7O5B|1|A|G|515
7O5B|1|A|C|516
7O5B|1|A|U|517
7O5B|1|A|A|518
7O5B|1|A|A|519
7O5B|1|A|C|520
*
7O5B|1|A|G|549
7O5B|1|A|G|550
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: