IL_7O5B_022
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7O5B|1|A|A|541, 7O5B|1|A|U|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_022 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.4194
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|A|G|524
7O5B|1|A|U|525
7O5B|1|A|G|526
7O5B|1|A|C|527
7O5B|1|A|C|528
7O5B|1|A|A|529
7O5B|1|A|G|530
*
7O5B|1|A|C|537
7O5B|1|A|G|538
7O5B|1|A|G|539
7O5B|1|A|U|540
7O5B|1|A|A|541
7O5B|1|A|A|542
7O5B|1|A|U|543
7O5B|1|A|A|544
7O5B|1|A|C|545
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: